The Proteomics Show: Recent Episodes
Ben Neely and Ben Orsburn
Ben Orsburn and Ben Neely co-host a podcast series in a “fireside chat” format with prestigious proteomics researchers. The guests are great, the hosts are questionable.
For a special US HUPO sponsored episode highlighting the upcoming HUPO Meeting in Toronto, Ben and Ben sit down to talk with one of the organizers, Dr. Mathieu Lavallée-Adam, University of Ottawa.
Keywords: bioinformatics; hockey; Toronto
For a special US HUPO sponsored episode highlighting the upcoming HUPO Meeting in Toronto, Ben and Ben sit down to talk with one of the organizers, Dr. Jennifer Geddes-McAlister, University of Guelph.
keywords: HUPO; Toronto; Fungal proteomics; one health
As part of the US HUPO sponsored "Alt Proteomics" series highlighting alternative proteomics things, Ben and Ben sit down to talk with Dr. Olga Dudchenko, Baylor College of Medicine.
keywords: structural genomics; Hi-C; DNA Zoo
As part of the US HUPO sponsored "Alt Proteomics" series highlighting alternative proteomics things, Ben and Ben sit down to talk with Dr. Ashley Spicer, California Department of Fish and Wildlife.
keywords: forensics; wildlife forensics
As part of the US HUPO sponsored "Alt Proteomics" series highlighting alternative proteomics things, Ben and Ben sit down to talk with Chef Michael Toscano of Le Farfalle (Charleston, SC), da Toscano (NYC), Porchetta Shop (Charleston, SC), Fugazzi at Revelry Brewing (Charleston, SC), 3's Golf (Greenville, SC), and Blanca Estrada Taqueria (Charleston, SC).
Keywords: pasta; culinary; golf
As part of the US HUPO sponsored "Alt Proteomics" series highlighting alternative proteomics things, Ben and Ben sit down to talk with Dr. Yasset Perez-Riverol, EMBL-European Bioinformatics Institute.
Keywords: open science; FOSS; FAIR; data archives; data repositories; affinity proteomics
As part of the US HUPO sponsored "Alt Proteomics" series highlighting alternative proteomics things, Ben and Ben sit down to talk with Dr. Cristiana Lungu, University of Stuttgart.
US HUPO Webinar link
Keywords: optoproteomics; biomolecular condensates
As part of the US HUPO sponsored "Alt Proteomics" series highlighting alternative proteomics things, Ben and Ben sit down to talk with Dr. Graham Wiley, Oklahoma Medical Research Foundation.
Keywords: Olink; Affinity-based proteomics
As part of the US HUPO sponsored "Alt Proteomics" series highlighting alternative proteomics things, Ben and Ben sit down to talk with Dr. Jeff Nivala, University of Washington.
Intro/outro music by Jeff.
Keywords: nanopore; biophysics; single molecule detection; ONT; oxford nanopore technologies
As part of the US HUPO sponsored "Alt Proteomics" series highlighting alternative proteomics things, Ben and Ben sit down to talk with Dr. Aleksei Aksimentiev, University of Illinois at Urbana-Champaign.
(Elevator music by Mykola Odnoro from Pixabay. We had some tech issues and lost about 2 minutes... so be glad our professional editor didn't fill with 2 minutes of elevator jazz to jam to.)
Keywords: nanopore; biophysics; single molecule detection
As part of the US HUPO sponsored "Alt Proteomics" series highlighting alternative proteomics things, Ben and Ben sit down to talk with Dr. Cecilia Lindskog, Uppsala University.
As part of the US HUPO sponsored "Alt Proteomics" series highlighting alternative proteomics things, Ben and Ben sit down to talk about the upcoming season.
As part of the non-sponsored sporadic "B-sides" series*, Ben and Ben sit down and talk with Dr. Kathryn Lilley, University of Cambridge.
(* this series is where we put guests we want to talk to but who do not fit within any sponsored series, but is still proteomics.... mostly)
As part of the [insert something here] series, Ben sits down to talk with our favorite press correspondent, Ben, about the recent ASMS Conference in Baltimore, MD.
As part of the non-sponsored sporadic "B-sides" series*, Ben and Ben sit down and talk with Dr. Avi Ma'ayan, Mount Sinai.
(* this series is where we put guests we want to talk to but who do not fit within any sponsored series, but is still proteomics.... mostly)
As part of the non-sponsored sporadic "B-sides" series*, Ben and Ben sit down and talk with Dr. Anna Barker, Chief Strategy Officer at the Ellison Medical Institute and Co-Director of CAS-Biomedicine at Arizona State University.
(* this series is where we put guests we want to talk to but who do not fit within any sponsored series, but is still proteomics.... mostly)
As part of the non-sponsored sporadic "B-sides" series*, Ben and Ben sit down and talk with Dr. Rob Beynon, University of Liverpool.
(* this series is where we put guests we want to talk to but who do not fit within any sponsored series, but is still proteomics.... mostly)
As part of the non-sponsored sporadic "B-sides" series*, Ben and Ben sit down and talk with Dr. Michael Shortreed, University of Wisconsin-Madison.
(* this series is where we put guests we want to talk to but who do not fit within any sponsored series, but is still proteomics.... mostly)
As part of the non-sponsored sporadic "B-sides" series*, Ben and Ben sit down and talk with Dr. Sue Weintraub, University of Texas Health Science Center at San Antonio.
(* this series is where we put guests we want to talk to but who do not fit within any sponsored series, but is still proteomics.... mostly)
As part of the non-sponsored sporadic "B-sides" series*, Ben and Ben sit down and talk with Lauren Leffer.
(* this series is where we put guests we want to talk to but who do not fit within any sponsored series, but is still proteomics.... mostly)
As part of the non-sponsored sporadic "B-sides" series*, Ben and Ben sit down with Parag Mallick, Nautilus Biotechnology. Actually this is a crossover from February where Parag had us on his podcast, Translating Proteomics. Find the original here.
(* this series is where we put guests we want to talk to but who do not fit within any sponsored series, but is still proteomics.... mostly)
As part of the US HUPO sponsored "Philly Express" series highlighting speakers at the upcoming 2025 US HUPO meeting in Philadelphia, Ben and Ben sit down to talk with Dr. Keenan Walker, National Institute on Aging - National Institutes of Health.
*note: this episode was recorded early January 2025, but could not be released until after US HUPO 2025.
As part of the US HUPO sponsored "Philly Express" series highlighting speakers at the upcoming 2025 US HUPO meeting in Philadelphia, Ben and Ben sit down to talk with Dr. Jesse Meyer, Cedars Sinai Medical Center, winner of the 2025 Robert J. Cotter New Investigator Award.
As part of the US HUPO sponsored "Philly Express" series highlighting speakers at the upcoming 2025 US HUPO meeting in Philadelphia, Ben and Ben sit down to talk with Dr. Kojo Elenitoba-Johnson, Memorial Sloan Kettering Cancer Center.
As part of the US HUPO sponsored "Philly Express" series highlighting speakers at the upcoming 2025 US HUPO meeting in Philadelphia, Ben and Ben sit down to talk with Dr. Joshua Coon, University of Wisconsin-Madison, winner of the 2025 Donald F. Hunt Distinguished Contribution in Proteomics Award.
As part of the US HUPO sponsored "Philly Express" series highlighting speakers at the upcoming 2025 US HUPO meeting in Philadelphia, Ben and Ben sit down to talk with Dr. David Fenyo, NYU Grossman School of Medicine, winner of the 2025 Gilbert S. Omenn Computational Proteomics Award.
As part of the US HUPO sponsored "Philly Express" series highlighting speakers at the upcoming 2025 US HUPO meeting in Philadelphia, Ben and Ben sit down to talk with Dr. Ileana Cristea, Princeton University, winner of the 2025 Catherine E. Costello Award for Exemplary Achievements in Proteomics.
As part of the US HUPO sponsored "Undergrad Expo" series highlighting undergraduate (or recent grads in Chad's case) members of US HUPO (in collaboration with the Mentorship Working Group), Ben and Ben sit down to talk with Chad Hyer, Brigham Young University.
As part of the US HUPO sponsored "Undergrad Expo" series highlighting undergraduate members of US HUPO (in collaboration with the Mentorship Working Group), Ben and Ben sit down to talk with Arabella Garcia, University of Minnesota Twin Cities.
As part of the US HUPO sponsored "Undergrad Expo" series highlighting undergraduate members of US HUPO (in collaboration with the Mentorship Working Group), Ben and Ben sit down to talk with Ethan Lilly, Vanderbilt University.
As part of the US HUPO sponsored "Undergrad Expo" series highlighting undergraduate members of US HUPO (in collaboration with the Mentorship Working Group), Ben and Ben sit down to talk with Noah Earls, Brigham Young University.
As part of the non-sponsored sporadic "B-sides" series*, Ben and Ben sit down and talk about their favorite papers of 2024.
(* this series is where we put guests we want to talk to but who do not fit within any sponsored series, but is still proteomics.... mostly)
As part of the US HUPO sponsored "Philly Express" series highlighting speakers at the upcoming 2025 US HUPO meeting in Philadelphia, Ben and Ben sit down to talk with Dr. Abraham Lenhoff, University of Delaware.
As part of the US HUPO sponsored "Philly Express" series highlighting speakers at the upcoming 2025 US HUPO meeting in Philadelphia, Ben and Ben sit down to talk with Dr. Laura Cox, Wake Forest University School of Medicine.
As part of the US HUPO sponsored "Philly Express" series highlighting speakers at the upcoming 2025 US HUPO meeting in Philadelphia, Ben and Ben sit down to talk with Dr. Tara Tracy, Buck Institute for Research on Aging.
As part of the US HUPO sponsored "Philly Express" series highlighting speakers at the upcoming 2025 US HUPO meeting in Philadelphia, Ben and Ben sit down to talk with Dr. Ryan Julian, University of California, Riverside.
Back by not-popular demand (three times?!), Ben and Ben sit down to talk with THE Agenda for the upcoming US HUPO meeting in Philadelphia in 2025. This is a great* way to get a feel for the conference if you have never been to US HUPO and will kick off this season where we talk to speakers for the upcoming conference.
- we realize some of our information may be missing, inaccurate, or even wrong. we recommend consulting the actual agenda, short course descriptions, and speaker bio's.
As part of the US HUPO sponsored "What is a proteomics?" series, Ben and Ben sit down to talk with Dorte Bekker-Jensen, Evosep.
As part of the US HUPO sponsored "What is a proteomics?" series, Ben and Ben sit down to talk with Donna Woolwine, retired practice management consultant and Ben Neely's mom.
As part of the US HUPO sponsored "What is a proteomics?" series, Ben and Ben sit down to talk with Dr. Ilaria Piazza, Max Delbrück Center for Molecular Medicine.
As part of the US HUPO sponsored "What is a proteomics?" series, Ben and Ben sit down to talk with Dr. Winston Timp, Johns Hopkins University.
As part of the US HUPO sponsored "What is a proteomics?" series, Ben and Ben sit down to talk with Dr. Rob Moritz, Institute for Systems Biology.
As part of the US HUPO sponsored "What is a proteomics?" series, Ben and Ben sit down to talk with Dr. Matthias Mann, Max Planck Institute of Biochemistry and Novo Nordisk Foundation.
As part of the US HUPO sponsored "What is a proteomics?" series, Ben and Ben sit down to talk about "What is Proteomics?" with Dr. Marc Wilkins, University of New South Wales. This episode was released on 5 September 2024, the 30th anniversary of the coining of the term proteomics.
As part of the US HUPO sponsored "What is a proteomics?" series, Ben and Ben sit down to talk with Dr. Lindsay Pino, Talus Bio, in an episode that is really just us talking about what Season 5 could be. Enjoy?
As part of the non-sponsored sporadic "B-sides" series*, Ben and Ben sit down and talk with our first return guest, Dr. Rachel Lance (Ep 21).
(* this series is where we put guests we want to talk to but who do not fit within any sponsored series, but is still proteomics.... mostly)
As part of the non-sponsored sporadic "B-sides" series*, Ben and Ben sit down and talk with Dr. Phil Wilmarth, Oregon Health & Science University.
(* this series is where we put guests we want to talk to but who do not fit within any sponsored series, but is still proteomics.... mostly)
As part of the non-sponsored sporadic "B-sides" series*, Ben and Ben sit down and talk with Dr. David Tabb, University Medical Center Groningen.
(* this series is where we put guests we want to talk to but who do not fit within any sponsored series, but is still proteomics.... mostly)
As part of the non-sponsored sporadic "B-sides" series*, Ben and Ben sit down and talk with Dr. Matt Padula, University of Technology Sydney.
(* this series is where we put guests we want to talk to but who do not fit within any sponsored series, but is still proteomics.... mostly)
As part of the non-sponsored sporadic "B-sides" series*, Ben and Ben sit down and talk with Dr. Mak Saito, Woods Hole Oceanographic Institution.
Music: "Olympic Fog" and "Atlantis Snowfall" from The Abyss EP by Deep Six (available on all major streaming services and bandcamp).
(* this series is where we put guests we want to talk to but who do not fit within any sponsored series, but is still proteomics.... mostly.)
As part of the non-sponsored sporadic "B-sides" series*, Ben and Ben sit down and talk with Drs. Leanne Wybenga-Groot, SPARC SickKids, and Brett Phinney, University of California, Davis.
(* this series is where we put guests we want to talk to but who do not fit within any sponsored series, but is still proteomics.... mostly.)
As part of the non-sponsored sporadic "B-sides" series*, Ben and Ben sit down and talk with Bill Lane, retired (former director of the Harvard Mass Spectrometry and Proteomics Resource Laboratory) and musician, and John Neveu, President of ESI Source Solutions.
(* this series is where we put guests we want to talk to but who do not fit within any sponsored series, but is still proteomics.... mostly.)
As part of the non-sponsored sporadic "B-sides" series*, Ben and Ben sit down and talk with Julia Schessner, Max Planck Institute of Biochemistry.
(* this series is where we put guests we want to talk to but who do not fit within any sponsored series, but is still proteomics.... mostly.)
As part of the non-sponsored sporadic "B-sides" series*, Ben and Ben sit down and talk with Dr. Henry Rodriguez, National Cancer Institute, NIH.
(* this series is where we put guests we want to talk to but who do not fit within any sponsored series, but is still proteomics... mostly.)
As part of the non-sponsored sporadic "B-sides" series*, Ben and Ben sit down to talk with Micha Birklbauer, University of Applied Sciences Upper Austria.
This episode was recorded live at the EuBIC-MS 2024 Winter School in Winterberg, Germany, as part of a Science Communication Workshop.
As part of the non-sponsored sporadic "B-sides" series*, Ben and Ben sit down to talk with Dr. John Arthur, University of Arkansas for Medical Sciences.
(* this series is where we put guests we want to talk to but who do not fit within any sponsored series, but is still proteomics.)
As part of the US HUPO sponsored "Oregon Trail" series, and at the request of the US HUPO Portland 2024 organizers, Ben Neely and Dr. Renã A.S. Robinson (filling in for Ben Orsburn) sat down with Dr. Olga Vitek, Northeastern University, in front of a live audience.
As part of the US HUPO sponsored "Oregon Trail" series highlighting speakers at the upcoming 2024 US HUPO meeting in Portland in 2024, Ben and Ben sit down to talk with Dr. Mark Flory, Oregon Health & Science University.
Back by not-popular demand, Ben and Ben sit down to talk with THE Agenda for the upcoming US HUPO meeting in Portland in 2024.
(note that Neely apologizes for confusing Fenselau and Costello. The latter has a US HUPO award named after her and likely is in attendance, while the former has received this award)
As part of the US HUPO sponsored "Oregon Trail" series highlighting speakers at the upcoming 2024 US HUPO meeting in Portland in 2024, Ben and Ben sit down to talk with Dr. Edward Marcotte, University of Texas at Austin.
As part of the US HUPO sponsored "Oregon Trail" series highlighting speakers at the upcoming 2024 US HUPO meeting in Portland in 2024, Ben and Ben sit down to talk with Dr. Neil Kelleher, Northwestern University, winner of the 2024 Donald F. Hunt Distinguished Contribution in Proteomics Award.
As part of the US HUPO sponsored "Oregon Trail" series highlighting speakers at the upcoming 2024 US HUPO meeting in Portland in 2024, Ben and Ben sit down to talk with Dr. Parag Mallick, Stanford University and Nautilus Biotechnology, winner of the 2024 Gilbert S. Omenn Computational Proteomics Award.
As part of the US HUPO sponsored "Oregon Trail" series highlighting speakers at the upcoming 2024 US HUPO meeting in Portland in 2024, Ben and Ben sit down to talk with Dr. Fan Liu, Leibniz-Forschungsinstitut for Molecular Pharmacology (FMP).
As part of the US HUPO sponsored "Oregon Trail" series highlighting speakers at the upcoming 2024 US HUPO meeting in Portland in 2024, Ben and Ben sit down to talk with Dr. Kristin Burnum-Johnson, Pacific Northwest National Laboratory.
As part of the US HUPO sponsored "Oregon Trail" series highlighting speakers at the upcoming 2024 US HUPO meeting in Portland in 2024, Ben and Ben sit down to talk with Dr. Ying Zhu, Genentech, Inc., winner of the 2024 Robert J. Cotter New Investigator Award.
As part of the US HUPO sponsored "Oregon Trail" series highlighting speakers at the upcoming 2024 US HUPO meeting in Portland, Ben and Ben sit down to talk with Dr. John Price, Brigham Young University.
As part of the US HUPO sponsored "Oregon Trail" series highlighting speakers at the upcoming US HUPO meeting in Portland in 2024, Ben and Ben sit down to talk with Dr. Keri Backus, University of California Los Angeles.
As part of the US HUPO sponsored "Oregon Trail" series highlighting speakers at the upcoming US HUPO meeting in Portland in 2024, Ben and Ben sit down to talk with Dr. Lisa Jones, University of California San Diego.
A special audio-only version of the October 2023 LFQ Battle Royale, organized by the US HUPO Virtual Media Outreach (VMO) Committee. We had Lindsay Pino (Talus Bio), Devin Schweppe (University of Washington), and Ling Hao (George Washington University) come represent their favorite flavor of LFQ proteomics for different experimental scenarios. (The video can be found here https://www.youtube.com/watch?v=OybDot4U7uc)
As part of the US HUPO sponsored "Faces of US HUPO" series, Ben and Ben sit down to talk with Dr. Benjamin Garcia, Washington University in St. Louis, and winner of Day 1 of the 2023 US HUPO Conference Lightning Talks.
As part of the US HUPO sponsored "Faces of US HUPO" series, Ben and Ben sit down to talk with Dr. Tonya Zeczycki, East Carolina University.
As part of the US HUPO sponsored "Faces of US HUPO" series, Ben and Ben sit down to talk with Dr. Rachel Lance, Duke University. This is a special episode as Dr. Lance isn't in our field, but surprisingly we discussed quite a bit of proteomics.
As part of the US HUPO sponsored "Faces of US HUPO" series, Ben and Ben sit down to talk with Dr. Renã A. S. Robinson, Vanderbilt University, and current US HUPO Board of Directors Member-At-Large.
As part of the US HUPO sponsored "Faces of US HUPO" series, Ben and Ben sit down to talk with Dr. Stephanie Cologna, University of Illinois, Chicago, and current US HUPO Board of Directors Member-At-Large.
As part of the US HUPO sponsored "Faces of US HUPO" series, Ben and Ben sit down to talk with Dr. Aleksandra Nita-Lazar, National Institutes of Health, National Institute of Allergy and Infectious Diseases, and current US HUPO Treasurer.
As part of the US HUPO sponsored "Faces of US HUPO" series, Ben and Ben sit down to talk with Dr. Ralph Bradshaw, Professor Emeritus, University of California, Irvine.
As part of the US HUPO sponsored "Faces of US HUPO" series, Ben sits down to talk with Ben from NIST Charleston... over a game of Oregon Trail (1985; Virtual Apple 2 java link: https://www.scullinsteel.com/apple2/#oregon_trail_1 )
As part of the US HUPO sponsored "Faces of US HUPO" series, Ben and Ben sit down to talk with Dr. Laurie Parker from the University of Minnesota, and Dr. Sarah Parker from Cedars-Sinai.
As part of the US HUPO sponsored "Faces of US HUPO" series, Ben and Ben sit down to talk with Dr. John Yates from The Scripps Research Institute.
As part of the US HUPO sponsored "Faces of US HUPO" series highlighting members of US HUPO, Ben and Ben sit down to talk with Dr. Birgit Schilling from the Buck Institute for Research on Aging.
As part of the US HUPO sponsored "Road to Chicago" series highlighting speakers at the upcoming US HUPO meeting in Chicago in 2023, Ben and Ben sit down to talk with Dr. Nick Riley from the Department of Chemistry at the University of Washington, and a 2022 US HUPO Travel Grant to HUPO awardee.
As part of the US HUPO sponsored "Road to Chicago" series highlighting speakers at the upcoming US HUPO meeting in Chicago in 2023, Ben and Ben sit down to talk with Kathryn Kapp from the Department of Chemistry at Vanderbilt University, and a 2022 US HUPO Travel Grant to HUPO awardee.
- Neely misspoke and Princess Leia is a hamster not a guinea pig
As part of the US HUPO sponsored "Road to Chicago" series highlighting speakers at the upcoming US HUPO meeting in Chicago in 2023, Ben and Ben sit down to talk with The Agenda. That's right, this low-budget (Neely edited it), extra long episode is all about the agenda, with plenty of digressions. This is our last recorded "Road to Chicago" episode but not the last "Road to Chicago" episode to be released, so stay tuned for more!
As part of the US HUPO sponsored "Road to Chicago" series highlighting speakers at the upcoming US HUPO meeting in Chicago in 2023, Ben and Ben sit down to talk with Dr. Alexander Ivanov from the Barnett Institute of Chemical and Biological Analysis and the Department of Chemistry and Chemical Biology at Northeastern University.
As part of the US HUPO sponsored "Road to Chicago" series highlighting speakers at the upcoming US HUPO meeting in Chicago in 2023, Ben and Ben sit down to talk with Dr. Milan Mrksich, Vice President of Research at Northwestern University, and the opening keynote speaker at US HUPO 2023.
As part of the US HUPO sponsored "Road to Chicago" series highlighting speakers at the upcoming US HUPO meeting in Chicago in 2023, Ben and Ben sit down to talk with Dr. Jennifer Van Eyk, Director of Basic Science Research in the Barbra Streisand Women's Heart Center and Director of the Advanced Clinical Biosystems Institute at Cedars-Sinai, and past US HUPO President.
As part of the US HUPO sponsored "Road to Chicago" series highlighting speakers at the upcoming US HUPO meeting in Chicago in 2023, Ben and Ben sit down to talk with Dr. Ying Ge from the Department of Cell and Regenerative Biology and the Department of Chemistry, University of Wisconsin-Madison.
It's a holiday mass spectacular surprise! We are finally releasing the previously unaired pilot of The Proteomics Show, recorded Summer 2022. Ben and Ben sat down to talk with Dr. Lindsay Pino, co-founder and CTO of Talus Bio. This episode's format was our original format for a longer show and is different than the currently airing "Road to Chicago" series, with reference to the mailbag (this segment will happen, so email us). Enjoy!
As part of the US HUPO sponsored "Road to Chicago" series highlighting speakers at the upcoming US HUPO meeting in Chicago in 2023, Ben and Ben sit down to talk with Dr. Xian Chen from the Department of Biochemistry and Biophysics, University of North Carolina School of Medicine.
As part of the US HUPO sponsored "Road to Chicago" series highlighting speakers at the upcoming US HUPO meeting in Chicago in 2023, Ben and Ben sit down to talk with Dr. Brian Searle from the Department of Chemistry and Biochemistry, The University of Ohio.
As part of the US HUPO sponsored "Road to Chicago" series highlighting speakers at the upcoming US HUPO meeting in Chicago in 2023, Ben and Ben sit down to talk with Dr. Amanda Hummon from the Department of Chemistry and Biochemistry, The University of Ohio.
As part of the US HUPO sponsored "Road to Chicago" series highlighting speakers at the upcoming US HUPO meeting in Chicago in 2023, Ben and Ben sit down to talk with Dr. Heather Desaire from KU Chemistry, The University of Kansas.
As part of the US HUPO sponsored "Road to Chicago" series highlighting speakers at the upcoming US HUPO meeting in Chicago in 2023, Ben and Ben sit down to talk with Dr. Yu (Tom) Gao from the College of Pharmacy, University of Illinois Chicago.