Trackside Science: Recent Episodes

Trackside Science

Two scientists talking about science while enjoying some fermented beverages every other week. One sober scientist nerding out about viruses the other other week.

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The moronic, mean-spirited and illegal assault on US government scientists continues.

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To those recently, and illegally, fired. Contains some strong language, because that is 100% appropriate.

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Episode 51 - Our Down Under connection! In 2021 we got an email from a listener from New Zealand working in Australia as a Physics Science Communicator. It took years to get over the shock that someone we didn't already know was actually listening to us, but we did and now he is here!

Drinks

Jeff - Folgers

Rob - Austin Eastciders

Errol - Hop Nation Brewing

The Dish (2000) - IMDb

Rear bumper: Freight Train Crossing.wav by Sailor55 (Freesound.org) & Night Train, The Mad Caps (1952, Archive.org)

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Remember how you waited anxiously as a kid for it to come? Not having to go to school on that day? Family from all over pulling into the driveway with gifts and food for the International Podcast Day celebration? Yah, we don’t either.

#internationalpodcastday

Alcohol

Jeff - Southern Tier Brewing Imperial Pumking Ale

Rob - Canada Dry Black Cherry Sparkling Seltzer Water

Podcasts we mentioned

Deviant Criminology - https://deviantcriminology.squarespace.com

Hot Shot Wake Up - https://thehotshotwakeup.substack.com/

Sounds and Music

International Podcast Day 2024 promo (internationalpodcastday.com)

Remixed by Jeff with:

Breaks Dig It Beat by DCDJ (freesound.com)

trap loop by emceeiscokid (freesound.com)

Bass Drop Pitch Sweep FX by Stereo Surgeon (freesound.com)

Rear bumper: Freight Train Crossing.wav by Sailor55 (Freesound.org) & Night Train, The Mad Caps (1952, Archive.org)

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No plan or pre-recording preparation whatsoever…the difference between dentists & endodontists… old microscopes… Rob’s home office inspection… regulation of medical data.. college graduation in state prisons.. pubpeer.com… problematic paper screener … (https://www.irit.fr/~Guillaume.Cabanac/problematic-paper-screener)... Jeff’s anxiety about teaching in the federal prison (update, students were nice but it was way more difficult teaching there than the state prison)

RIP Vanessa, Rob’s former colleague in South Dakota

Alcohol

Jeff - All the Holiday Things, Wild Leap Brewing

Rob - Be Hoppy Pale Ale, Wormtown Brewing

Sounds & Music

All sound are from freesound.org unless otherwise noted

Opening bit:

Squeaky Car Door (coltures)

Car Acceleration Inside Car.wav (alexftw123)

City ambience with soft rain…(felix.blume)

Opening a door in the city and going inside (evsecrets)

engine_turn_signal_subaru_forester_1989. (mario1298)

G13-46-Abrupt Car Stop.wav(craigsmith)

Footsteps on tiled bathroom (brandonb1111)

service_elavator.mp3 by morgantj

Car Explosion w Debris.mp3 by PNMCarrieRailfan

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We relive the highs and lows of graduate school through a spot-on video game.

PhD Simulator - A Text-Based Game by Mianzhi Wang (wmz.ninja)

Email: tracksidescience@gmail.com

Instagram: Tracksidescience

Patreon: https://www.patreon.com/tracksidescience

Alcohol

Jeff - Dekalb County’s fine tap water

Rob - Shark Jumper IPA Night Shift Brewing

Sounds & Music

Front Bumper - combination of:

A rapper in trouble - after he made a bad joke! by fmceretta (freesound.org)

Team Masaka - Sad Moan - by TeamMasaka (freesound.org)

Rear bumper: Freight Train Crossing.wav by Sailor55 (Freesound.org) & Night Train, The Mad Caps (1952, Archive.org)

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Episode 47 - What connects you to science?

Rob’s a conference guy, he likes interacting with people. Jeff’s a reading-papers-in-a-quiet-house kind of guy. Rob likes the cutting edge while Jeff gravitates towards the arcane. Rob’s beer is bigger than Jeff’s.

Email: tracksidescience@gmail.com

Instagram: Tracksidescience

Patreon: https://www.patreon.com/tracksidescience

Alcohol

Rob - Flemington Fog Juicy Hazy India Pale IPA, Flemington NJ

Jeff - Fluffiest Otter Stout, Sandy Springs GA

Sounds & Music

Matrix_RetroError

ThatJeffCarter_electro-magnetic-interference

Dangerbabe_Android-keypad-dialing

Rear bumper: Freight Train Crossing.wav by Sailor55 (Freesound.org) & Night Train, The Mad Caps (1952, Archive.org)

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Is it a Promethean kind of thing? An end of the world thing? It’s definitely a protecting people with Fecal Incontinence kind of thing. It’s definitely not able to cite it’s sources.

Email: tracksidescience@gmail.com

Instagram: Tracksidescience

Patreon: https://www.patreon.com/tracksidescience

Alcohol

Rob - Be Hoppy Indian Pale Ale Wormtown Brewery Worcester, Mass

Jeff - Gates of Smordor Stout Westbrook Brewing Mount Pleasant South Carolina

Sounds & Music

Spike Jones - The Tennessee Waltz

Pastabra - Squeaky office chair

MATRIXXX - Door, Closing.wav

Rear bumper: Freight Train Crossing.wav by Sailor55 (Freesound.org) & Night Train, The Mad Caps (1952, Archive.org)

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Should we pay scientists to speak? What do people in prison think about paid experts?  Is the United Federation of Planets communist?  Does getting paid fat stax help your work/life balance?

Email: tracksidescience@gmail.com      Instagram: Tracksidescience

Patreon: https://www.patreon.com/tracksidescience

Alcohol

Jeff - Dragon’s Milk

Rob - Fifty Million Dollar Man Double IPA

Sounds & Music

InspectorJ - door-front-opening, Letsmakemuffins - footsteps echo hall, SpaceJoe Coins Drop - 8, Johnnie_Holiday FX Mario Coin (JH),Rear bumper: Freight Train Crossing.wav by Sailor55 (Freesound.org) & Night Train, The Mad Caps (1952, Archive.org)

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If you are at all interested in stuff like this, take a look at https://promedmail.org/

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In August of 2022 we had special guest Dr. Peter Haugen on to talk about work identity.  By the end, we are just sappy Dads who miss our kids being little.

Email: tracksidescience@gmail.com

Instagram: Tracksidescience

Patreon: https://www.patreon.com/tracksidescience

Alcohol

Dr. Haugen - Gin & Tonic

Rob - Equilibrium Brewing - Strata Outta the Laboratory Triple India Pale Ale

JEff - Orpheus Brewing - Do or Die Chocolate Imperial Stout

Dr. Amy Wrezniewski

Sounds & Music

The game show theme and creepy  church organ were straight-up lifted off Youtube

pickup coin by MusicLegends

Rear bumper

Freight Train Crossing.wav by Sailor55 (Freesound.org)

Night Train, The Mad Caps (1952), (Archive.org)

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This one was recorded during the Spring Semester of 2021 and sat on my hard drive for a while.

Email: tracksidescience@gmail.com

Instagram: Tracksidescience

Patreon: https://www.patreon.com/tracksidescience

Alcohol

Bearded Flannel Cat India Pale Ale - Sunken Silo

Big F’in Stout - Scofflaw

Sounds Effects (all from FreeSound)

wanderful.flac by Timbre

Light Bulb Pops.mp3 by CGEffex

Wood burning in the stove by smand

Digital glitch_018.wav by Alien XXX

20100320.slide.projector.wav by dobroide

Projector Button Push.wav by GreekIrish

Flame thrower varying power.wav by natemarler

st_tos_phaser_01.wav by ironcross32

CommunicatorChirp_STTOS_recreated.wav by zimbot

Rummaging through cardboard boxes by Podsburgh

door opening, closing 1671067704651.mp3 by Mbytemama93

Rear bumper

Freight Train Crossing.wav by Sailor55 (Freesound.org)

Night Train, The Mad Caps (1952), (Archive.org)

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Both of us have done a bit of citizen science over the years, and here are some very high-tech freely available tools that you can use too!  We are serious about our offer to show anyone how to use these, just email us at tracksidescience@gmail.com.  Enjoy!

Music & Sounds

Freight Train Crossing.wav by Sailor55 (Freesound.org)

Night Train, The Mad Caps (1952), (Archive.org)

Alcohol

2018 La Crema Pinot Noir 

Escape from Reality Double Hopped Pale Ale

Free Online Citizen Science Tools

NCBI Virus

Retraction Watch Database (about)

NextStrain & NextClade

Online Mendelian Inheritance in Man (OMIM)

PromedMail

Personal Genome Project

Galaxy

Franklin

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An interview with the acclaimed geneticist Dr Robert Pyatt about a set of diseases that is coming up in acclaimed educator Dr Jeff Mahr's class.

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Email: tracksidescience@gmail.com

Twitter: @TracksideScien1

Instagram: Tracksidescience

Patreon: https://www.patreon.com/tracksidescience

Booze:

Chocolate Moon Pie Stout, Naked River Brewing

La Grange Point India Pale Ale, Flounder’s Brewing

Books:

The Last Stargazers, by Emily Levesque

Sister, Maiden, Monster, by Lucy Snyder

Rise and Fall of the Dinosaurs, by Steve Brusatte

The Kaiju Preservation Society, by John Scalzi

Bright Galaxies Dark Matter & Beyond, the Life of Vera Rubin, By Ashley Jean Yeager

Broken in the Best Possible Way, Jenny Lawson

Annals of the Former World, by John McPhee

A Lab of One’s Own, by Rita Caldwell

Sounds:

Front - Class Door, Sliding (OroborosNZ) & Library Sounds (Artemis_ch) both freesound.org

Rear - Freight Train Crossing.wav by Sailor55 (Freesound.org) & Night Train, The Mad Caps (1952), (Archive.org)

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Because everyone is constantly dying. Also,we suck at virtual rochambeau.

Email: tracksidescience@gmail.com

Twitter: @TracksideScien1

Instagram: Tracksidescience

Patreon: https://www.patreon.com/tracksidescience

Rex Golliath - Cabernet Sauvignon

Redrum Double Milk Stout (couldn’t find the brewery)

Richard Lewonton (Mar 29, 1929 – Jul 4, 2021) - Geneticist

John Trojanowski (Dec 17, 1946 – Feb 8, 2022) - Neuroscientist & dedicated partner

Donald Caspar (Jan 8, 1927 - Nov 27, 2021) - Structural Virologist

Donald Gurnett (Apr 11, 1940 – Jan 13, 2022) - Physics, inventor of Space Plasma Wave Physics, Dad, Overall Dude - his Plasma Detectors are >14.5 BILLION MILES from Earth and still working!

How far are the Voyager probes: https://voyager.jpl.nasa.gov/mission/status/

Academic Family Trees: https://academictree.org/

Sounds:

Freight Train Crossing.wav by Sailor55 (Freesound.org)

Night Train, The Mad Caps (1952), (Archive.org)

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Can two words in the title change the number of downloads of an episode?  We discuss downloads, podcast ratings and then decide to try a little experiment.  Errol, I am eternally sorry that I forgot your name!

Email: tracksidescience@gmail.com

Twitter: @TracksideScien1

Instagram: Tracksidescience

Patreon: https://www.patreon.com/tracksidescience

Alcohol:

Rob - Hefeweizen by Flounder Brewing 

Jeff - Cafe Stout by Prohibition Brewery

Sounds:

Front bumper - 

Rubber duck small 1 by ermfilm, fireworks 3bursts sizzle by atomwrath (Freesound.org)

Rear bumper:

Freight Train Crossing.wav by Sailor55 (Freesound.org)

Night Train, The Mad Caps (1952), (Archive.org)

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Rob hates it, Jeff loves it, and no one should publish their research in Hustler.

Email: tracksidescience@gmail.com

Twitter: @TracksideScien1

Instagram: Tracksidescience

Patreon: https://www.patreon.com/tracksidescience

Alcohol:

Rob - Hop Valley Bubblestash IPAwith CryoHops

Jeff - Rex Goliath Cabernet Savignon

Sounds:

Front bumper - 8 Bit Circus Music by bone666138 (Freesound.org)

Rear bumper:

Freight Train Crossing.wav by Sailor55 (Freesound.org)

Night Train, The Mad Caps (1952), (Archive.org)

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Rob & Jeff return to talk scientifically about their old man health problems.  Plus, what happened to 2021?

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Episode 35 - Science Fairs (Rob hates them)

This episode sat on my hard drive for a year, I apologize.

Email: tracksidescience@gmail.com

Twitter: @TracksideScien1

Instagram: Tracksidescience

Patreon: https://www.patreon.com/tracksidescience

Alcohol:

Neshaminy Creek Brewing

Cheap Box Wine - unidentified, but I’m sure you can find some on your own

Sounds (Freesound.org):

coaster 01.aiff by martian

New_Recordingstatefair.mp3 by fkunze

Carnival and Crowd Ambiance by Ev-Dawg

Polka by Triciclo Circus Band my new favorite band, they rock

Spotify link here Twitter link here

Rear bumper:

Freight Train Crossing.wav by Sailor55 (Freesound.org)

Night Train, The Mad Caps (1952), (Archive.org)

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Email: tracksidescience@gmail.com

Twitter: @TracksideScien1

Instagram: Tracksidescience

Patreon: https://www.patreon.com/tracksidescience

This Week in Virology (link)

NERVTAG paper (link)

English Robot Text-to-speech engine (link)

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Lou is a writer and journalist who works with the Society of Professional Journalists and gives some of the most insightful and interesting analysis of journalism today.

Email: tracksidescience@gmail.com

Twitter: @TracksideScien1

Instagram: Tracksidescience

Patreon: https://www.patreon.com/tracksidescience

Links:

Lou Harry’s website (here)

Society for Professional Journalism (here)

Drinks:

Kroger Brand coffee (here)

Blueberry Tea (here)

Sounds (Freesound.org):

Running by Juandamb

Office/Store Door Bell Jingle (on a string) by EpicWizard

Grocery store cash register by jmayoff

Rear bumper:

Freight Train Crossing.wav by Sailor55 (Freesound.org)

Night Train, The Mad Caps (1952), (Archive.org)

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Probably not, but that shouldn't change what you are doing now.

Nextstrain Twitter (here)

This Week in Virology (here)

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What's in the Pfizer and Moderna vaccine and why is a third of the population fatigued?

Ethanol:

Dragon’s Milk, New Holland (here)

Eye of the Storm Sitra, Jersey Cyclone Brewing (here)

1798 Brewery Okracoke (here)

Science:

Pfizer FDA EUA briefing document (here)

Moderna FDA EUA briefing document (here)

Vaccine Adverse Event Reporting System (here)

Sounds (from freesound.org):

freight09dec.wav by Heigh-hoo

Locomotive 3 Approach Idle Exit.wav by patchen

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The answer might surprise us.

Pfizer FDA EUA briefing document: link

Pfizer FDA EUA meeting: link

Moderna FDA EUA briefing document: link

Moderna FDA EUA meeting: link

VAERS: link

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Just a short little episode to let you know we are back.  We think.

An Exploration of the Structure of Effective Apologies (link) - Paywall.... sorry?

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Email: tracksidescience@gmail.com

Twitter: @TracksideScien1

Instagram: Tracksidescience

Patreon: https://www.patreon.com/tracksidescience

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Wherein Rob and Jeff do an experiment to see how quickly beer and red wine will degrade vaccine knowledge. Jeff uses disabled squirrels and broken-down cars as analogies for attenuated virus vaccines. Rob tries to pin Jeff down on SARSCoV2 vaccine predictions for 2020.

Email: tracksidescience@gmail.com

Twitter: @TracksideScien1

Instagram: Tracksidescience

Patreon: https://www.patreon.com/tracksidescience

Drinks:

Peter Cellers Comic Red Wine (here)

Neshamany Creek In Denial Lager (here)

Links:

Smithsonian’s vaccine seminar series (here)

New York Times Coronavirus Vaccine Tracker (here)

5-10% of health people do not respond to the HBV vaccine (here)

Sounds (freesound.org):

Squeaky Car Door by Coltures

Parking Lot Ambient by brainwaves8

Office/Store Door Bell Jingle (on a string) by EpicWizard

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Email your virus questions to virusquestions@gmail.com

Links:

This Week in Virology episode #640 (here)

Abbot ID Now (here)

English robot generator (here)

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Here’s to all the Dads out there. And their jokes

Email: tracksidescience@gmail.com

Twitter: @TracksideScien1

Instagram: Tracksidescience

Patreon: https://www.patreon.com/tracksidescience

Sounds (Freesound.org)

Baddum Tish - Comedy Rimshot by rodincoil

Cricket Chirp by Sojan

musical saw ascending UFO bu JohnsonBrandEditing

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Email your virus questions to virusquestions@gmail.com

Links:

US FDA approved SARS-CoV-2 antibody tests (7/22/2020) (link)

Types of tests - 

Chemiluminescent Microbead Immunoassay (Youtube)

Lateral flow Immunoassay (Youtube) 

ELISA (Youtube)

Sounds:

https://lingojam.com/RobotVoiceGenerator

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Email your virus questions to virusquestions@gmail.com

Links:

This Week in Virology > https://www.microbe.tv/twiv/twiv-641/

COVID-19 PCR testing > https://youtu.be/Vd38iS_W7ww

Note - I didn’t mention the “RT” part because… concision!  The RT step just turns the viruses RNA into DNA and then the PCR starts on THAT.

Sounds:

https://lingojam.com/RobotVoiceGenerator

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Sydni is working on an amoeba that farms a bacteria!  

Sydni’s amazing art: SciDotArt

Email: tracksidescience@gmail.com

Twitter: @TracksideScien1

Instagram: Tracksidescience

Patreon: https://www.patreon.com/tracksidescience

The Menu:

Mango White Claw

Peter Vella Vineyards Cab Sav

Terrapin Hopsecutioner

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Rob & Jeff again pick two very different movies

Southern Tier Brewing Double IPA (here)

Liberty Creek Cabernet Sauvignon (here)

Osmosis Jones (IMDb) 

The Satan Bug (IMDb)

sound effects

Freesound.org:

Night Traffic by Oneirophile

Archive.org:

KTLA 5 - Movie Theater - 1986 - Theme Song

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Email: tracksidescience@gmail.com

Twitter: @TracksideScien1

Instagram: Tracksidescience

Patreon: https://www.patreon.com/tracksidescience

References:

Muniesa et al Microb Biotechnol. 2011 Nov; 4(6): 725–734.

Carlton et al (Loessner) 2005 Reg. Tox. & Pharm

Loessner 1991 App & Env Micro

Zink & Loessner 1992 App & Env Micro

Sounds (all from Freesound.org)

Freaky Dance Virus 02.wav by Sepal

00311 crank winch handle 1.wav by Robinhood76

Running Water by harrybates01

Car key inserted into ignition by partykus2

Homemade hydraulic hoist.aif by FPJ666

Plywood_Prying_01.wav by dheming

disconcerting 0N_55mi by Setuniman

Explosion by Iwiploppenisse

Hope by tictac9

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Episode 28 - Epidemic Movie Reviews

Skeleton on Horse 1937 (link)

Quarantine 2008 (link)

Partners in Health (link)

Alcohol:

Naked Grape Cabernet Sauvignon

Cloudwalker Hazy Juice IPA

Email: tracksidescience@gmail.com

Twitter: @TracksideScien1

Instagram: Tracksidescience

Patreon: https://www.patreon.com/tracksidescience

Music:

Night Train, The Mad Caps (1952), Archive.org

Sounds:

walking by railroad track by Jeff Mahr

cinemato.wav by jlozano

GE locomotive by kicknit79

drumroll.wav by adriann

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Email: tracksidescience@gmail.com

Twitter: @TracksideScien1

Instagram: Tracksidescience

Patreon: https://www.patreon.com/tracksidescience

Music & Sounds:

Night Train, The Mad Caps (1952), Archive.org

STE-013 train and bell.wav by tim.kahn (Freesound.or)

Darth Vader Breathing.wav by 18hiltc (Freesound.org)

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Email: tracksidescience@gmail.com

Twitter: @TracksideScien1

Instagram: Tracksidescience

Patreon: https://www.patreon.com/tracksidescience

References

Original coronavirus study: 2020 van Doremalen et al (MedRxiv link)

Goldberg drum: Golberg et al. 1958 American Journal of Epidemiology (link)

Ebolavirus and Goldberg drum: 2016 Fischer et al Journal of Infectious Disease (link)

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Wherein Rob and Jeff talk about the COVID-19 pandemic.  What are our students asking us?  What are we doing different? What are our plans if we wake up tomorrow with a fever and a cough? Are men washing their hands more or is that just observer bias?

Johns Hopkins Coronavirus Global Cases Dashboard

Terrapin Brewing

Rex Goliath

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Email: tracksidescience@gmail.com

Twitter: @TracksideScien1

Instagram: Tracksidescience

Patreon: https://www.patreon.com/tracksidescience

References:

1933 Bushnell and Brandly. Laryngotracheitis in chicks. Poultry Science

1962 Kendall et al. Virus isolations from common cold occurring in a residential school. British Medical Journal

1968 Coronaviruses. Nature (November 16, vol 220)

2005 Poon et al. Identification of a novel coronavirus in bats. Journal of Virology

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How serious is the nCoV-2019 outbreak? Will it spread much outside of China? Why does Jeff think he can DIY a clinical diagnostic lab? Why can’t we drink and think?.

Email: tracksidescience@gmail.com

Twitter: @TracksideScien1

Instagram: Tracksidescience

Patreon: https://www.patreon.com/tracksidescience

Alcohol

Corona Familiar

Riverhorse Hippos Hand Citrusey Double India Pale Ale

Links

Johns Hopkins CSSE nCoV-2019 Coronavirus Map

Centers for Disease Control US case count

Lancet paper with first description of transfer in China within a cluster (here)

Lancet paper with first clinical description of nCoV-2019 disease symptoms (here)

European CDC Jan 31 nCoV-2019 risk assessment (here)

Bat’s tolerating viruses (here)

Music

Night Train, The Mad Caps (1952), Archive.org

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Applying for jobs is a job. Good jobs go bad.  Sometimes you need a priest.  Bosses can turn into committees. Sometimes you need a marriage therapist. Clinical genetics positions are changing.

Email: tracksidescience@gmail.com

Twitter: @TracksideScien1

Instagram: Tracksidescience

Patreon: https://www.patreon.com/tracksidescience

Sounds:

Evening Birds2 - Robins 03-30-2016.mp3 by kb7clx

train03_long_composition_screeching.wav by aesqe

CSX locomotive on crossing Montreal Rd by JM

freight_train_2.flac by Zabuhailo

Music:

Night Train, The Mad Caps (1952), Archive.org

Free science swag - details at the beginning.  Remember, there are two words in every species.

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Email: tracksidescience@gmail.com

Twitter: @TracksideScien1

Instagram: Tracksidescience

Patreon: https://www.patreon.com/tracksidescience

Map of rabbits in Australia (here)

Sounds:

Kookaburra.wav by pocket

Laughing Kookaburra.wav by ERH

DIDGERIDOO 05.wav by sandyrb

Spinifex Wind #1 by kangaroovindaloo

Desert at Night by kangaroovindaloo

Bullroarer by Sonic-ranger

Pirate Ship at Bay.wav by CGEffex

Land_Ho by AnnB

Vintage Ambience 1 (Red Lib) » R09-21-Western Town General Movement.wav by craigsmith

2 Horse Carriage by Leo153

clearing throat.mp3 by fless005

G52-07-Horse Drawn Carriage.wav by craigsmith

The Wild Wild West ( No music) by craigsmith

Happy.wav by TheOmegaPixel

Popcorn_revisited_munching.wav by digifishmusic

Far Away City Traffic Ambience by Dpoggioli

00695 men crowd 1.wav by Robinhood76

horse's whinny by Kubuzz

aboiements.mp3 by Pierre Grandjean

SHOTGUN_SHOT_03.wav by MATTIX

typewriter22.ogg by tams_kp

Loop-Copy-Mutate » 1 strijken-p1-p1.aif by heumo

car horn 20.3.11.wav by toiletrolltube

horn stolen from the best movie ever (here)

End music: The Happy Monster by Chubby Jackson and his Orchestra (Archive.org)

Selected References:

Description of the release of myxomavirus:

Ratcliffe et al 1952 Nature

Myxomavirus general and evolution:

Fenner's Veterinary Virology 4th ed

Rivers TM 1930 J. Exp Med 1 June » 51 (6): 965 INFECTIOUS MYXOMATOSIS OF RABBITS

Kerr et al Myxoma Virus and the Leporipoxviruses: An Evolutionary Paradigm. Viruses 2015, 7, 1020-1061

Wang et al Nature Imm 2004 Disruption of Erk-dependent type I interferon induction breaks the myxoma virus species barrier

Wolfe et al 2018 J Virol Myxoma Virus M083 Is a Virulence Factor Which Mediates Systemic Dissemination

Condit, RC on The Red Queen meets the White Rabbit. (#457, 2017, September 3) This Week in Virology

Rabbits in Australia:

Coman, B (1999). Tooth & Nail – the story of the rabbit in Australia. Text Publishing Company: Melbourne.

Shepherd and Edmonds. The Victorian Naturalist v113 1996 page 98

Tomlinson, A. R. and Gooding, C. D., "THE ORGANISATION OF RABBIT CONTROL (Oryctolagus cuniculus) IN WESTERN AUSTRALIA" (1970). Proceedings of the 4th Vertebrate Pest Conference (1970). 39. 1970

Stead DG. The Rabbit Menace in New South Wales, Dept of Agriculture, NSW 1925

Lange & Graham 1983 Australian Journal of Ecology

Rev. sci. tech. Off. int. Epiz., 2010, 29 (1), 103-111 Deliberate introduction of the European rabbit, Oryctolagus cuniculus, into Australia

Art and Architecture, mainly. (2011, January 21) [Blog post] Retrieved from: http://melbourneblogger.blogspot.com/2011/01/louis-pasteur-rabbits-and-sex-in.html

Annual report of the Acclimatisation Society of Victoria : with the addresses delivered at the annual meeting of the Society... 1st-7th (1862-1871). (link to Biodiversity Heritage Library)

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I interview science teacher and author of "How We Teach Science, What's Changed, and why it matters".

John's book --> link here (It's at Harvard University Press if the link isn't working)

A Private Universe --> here

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Jerry Merryman (killer of the slide rule) June 1932 – February 27, 2019 (obituary)

Sidney Brenner (cell biology & genetics) January 1927 – April 5, 2019 (obituary)

Owen Garriot (engineer, scientist, astronaut) November 1930 – April 15, 2019 (obituary)

Gerald Berenson (cardiologist) September 1922 – November 22, 2018 (obituary)

Lamia Al-Gailani Werr (archeologist) March 1938 – January 18, 2019 (obituary)

Links:

book: Eighth Day of Creation

Email: tracksidescience@gmail.com

Twitter: @TracksideScien1

Instagram: Tracksidescience

Patreon: https://www.patreon.com/tracksidescience

Music:

We Shall Walk Through the Streets of the City (Dirge & March) 1980, Classic Sounds of New Orleans by Smithsonian Folkways (Archive.org)

Sound:

Train_Ext_Horn_1.wav by Cell31_Sound_Productions (Freesound.org)

car crash by Squareal (Freesound.org)

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Coming out on the 50th anniversary of the launch of Apollo 11, we talk about what we know about the mission, how it affected culture in the United States and how conflicted we would feel if Trump's desire for flashiness actually got us back to the moon.

Email: tracksidescience@gmail.com

Twitter: @TracksideScien1

Instagram: Tracksidescience

Patreon: https://www.patreon.com/tracksidescience

Sound credits:

Apollo 11 landing radio chatter (NASA, archive.org)

Windsdown by Jmayoff

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Rob & Jeff interview Dan Mushalko, General Manager, host and alpha-Geek at WCBE in Columbus Ohio. Listen to how his science education show The Amazing Science Emporium was born from Hurricane Gloria and about his efforts while at NASA to convince America that Skylab wasn’t going to fall on their head.

Drinks:

Rex Goliath Cabernet Sauvignon

Fernson Shy Giant IPA

Ginger Tea

Music:

“Get Up and Give” (1952) Grady Martin and His Slew Foot Five, Archive.org

“Night Train” The Mad Caps (1952), Archive.org

Links:

Romulan Ale

The Amazing Science Emporium

Mercury in coal (in the ground)

Mercury in vaccines (FDA)

UCLA Galactic Center Group

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Email: tracksidescience@gmail.com

Twitter: @TracksideScien1

Instagram: Tracksidescience

Patreon: https://www.patreon.com/tracksidescience

Music:

Freaky Dance Virus 02.wav by Sepal (Freesound.org)

Elevator Music 1 Hour (Archive.org)

The Happy Monster by Chubby Jackson and his Orchestra (Archive.org)

References:

Peach yellow spot disease, Tymovirus https://www.ncbi.nlm.nih.gov/pubmed/30923968

Lynx canadensis gammaherpes virus-1https://www.ncbi.nlm.nih.gov/pubmed/31010021

Ntepes Virus https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6433041/

Aspergillus flavus Partitivirus https://www.ncbi.nlm.nih.gov/pubmed/30984147

Mud crab tombus-like virus https://www.ncbi.nlm.nih.gov/pubmed/30651355

Tetrastichus brontispae RNA virus 1https://www.mdpi.com/1999-4915/11/3/257/htm

Yongsan bunyavirus 1, Yongsan picorna-like virus 3 and Yongsan sobemo-like virus 1 https://www.ncbi.nlm.nih.gov/pubmed/30841520

Horse Plasma Orthobunyavirus https://www.ncbi.nlm.nih.gov/pubmed/30833612

Burpengary Virus https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6466430/

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Founders Breakfast Stout

Remedy Nonsense IPA

Margaret Bright (Public Health) Nov 19, 1918 - Dec 28, 2018 (obituary)

Martin Gore (Cancer Research) Feb 1951 – 10 Jan 2019 (obituary)

Arthur Art Rosenfeld (Physics) June 22, 1926 - Jan 27, 2017 (obituary)

Seung-Yull Cho (Parasitology) Nov 16, 1943 - Jan 27, 2019 (obituary)

Email: tracksidescience@gmail.com

Twitter: @TracksideScien1

Instagram: Tracksidescience

Patreon: https://www.patreon.com/tracksidescience

Music:

We Shall Walk Through the Streets of the City (Dirge & March) 1980, Classic Sounds of New Orleans by Smithsonian Folkways (Archive.org)

Sound:

Train_Ext_Horn_1.wav by Cell31_Sound_Productions (Freesound.org)

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Email: tracksidescience@gmail.com

Twitter: @TracksideScien1

Instagram: Tracksidescience

Patreon: https://www.patreon.com/tracksidescience

Music: La Cucaracha, The Castilian Troubadours. 1934. Archive.org

References:

Suto et al. 1979. Microbiology & Immunology. A new virus isolated from the cockroach, Periplaneta fuliginosa

Mukha et al. 2006. Journal of General Virology. Characterization of a new densovirus infecting the German cockroach, Blattella germanica

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Our favorite lab techniques. Jeff, molecular, Rob, cellular? Rob HATES bio banks and Jeff just can’t wrap his mind around them. Special guest Devon makes her second appearance.

Email: tracksidescience@gmail.com

Twitter: @TracksideScien1

Instagram: Tracksidescience

Patreon: https://www.patreon.com/tracksidescience

Favorites:

Jeff: Expression screening phage libraries & 5’ Rapid Amplification of cDNA Ends (5’RACE)

Rob: Plasmid Pigs & Microarrays for comparative genomic hybridization

Least favorites:

Jeff: Suiting up in the BSL3 lab

Rob: Biobanks

Music:

Front bumper: “Lonesome Railroad Blues” (1953) Firehouse Five, plus Two, Archive.org

Rear bumper: “Night Train” The Mad Caps (1952), Archive.org

Commercial: Jazz Break • The Best Contemporary Smooth Jazz by Kuban, Archive.org

Sounds (Freesound.org)

train_horn.aif by tim.kahn

Train Yard Night Ambiance by ultradust

tarp flapping.wav by Huggy13ear

tarp flapping.wav by stormpetrel

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Promedmail: http://www.promedmail.org/

Front music - Freaky Dance Virus 02.wav by Sepal freesound.org

End music – The Happy Monster by Chubby Jackson and his Orchestra. 1948

Sounds (all from Freesound.org):

tappingMic.wav by susychristiansen

Mic feedback fx short Mid 2.wav by chimerical

Cocktail Sounds.wav by KenRT

Cocktail Shaker.wav by KenRT

shaken.not.stirred.wav by dobroide

SheryT_mixdown.wav by sherytirados

Spin Cycle.wav by Leafs67

centrifugado.wav by primisteka

Microwave Beeps by joe_anderson22

20061016.laboratory.flac by dobroide

Tiny rocks thrown in water.wav by natemarler

Short Click/Snap Perc by waveplay_old

Mechanical keyboard clicking. Different keys (1) by javierat

Schuetzenfest Kapelle.mp3 by prodepha

LuckyLittleMystery.flac by copyc4t

Atmosphere - Horror 1 (Loop) by julius_galla

Kick very low & deep.mp3 by steven169

mystery.wav by CyberMad

Screechy Toaster Oven by megmcduffee

bubbles-popping by aryanotstark

Boat Horn.aif by devy32

Ambience, Seaside Waves, Close, A.wav by InspectorJ (Freesound.org)

seagull 2 fx.wav by Snapper4298

References

Discovery

Philippe et al 2013 Science

Acanthomoeba diversity

Geisen et al 2014 Parisitology Res

Montoya et al 2018 Exp Parisitol

Molecular details of Pandoravirus

Legendre et al 2018 Nat Comm

Andrade et al 2018 Virology Journal

Brown et al Appl Environ Microbiol. 1982 Aug;44(2):491-3

http://tolweb.org/Eukaryotes/3/2008.09.02 (Phylogenetic tree including Acanthamoeba)

Viruses in ballast water of supertankers

Hwang et al Marine Pollution Bulletin 2018 December 137

Special thanks to Rob, Todd and Pete for last minute feedback

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The tale continues as the drinks are drained.  Rob turns down Guam and Jeff leaves Bristol Bay for good.  Devon just rolls her eyes.

Email: tracksidescience@gmail.com

Twitter: @TracksideScien1

Instagram: Tracksidescience

Patreon: https://www.patreon.com/tracksidescience

Music

Pack Up Your Troubles In Your Old Kit Bag And Smile, Smile, Smile! Bob Crosby And His Orchestra; The Bob-Cats; Felix Powell; George Asaf (1942), Archive.org

Night Train, The Mad Caps (1952), Archive.org

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Email: tracksidescience@gmail.com

Twitter: @TracksideScien1

Instagram: Tracksidescience

Patreon: https://www.patreon.com/tracksidescience

Sounds:

Warble Alarm Mono.wav by tombenedict (freesound.org)

Africa, bushes, close birds and wind by Martin.Sadoux (freesound.org)

Gnou-Beuglement.aif by roubignolle (freesound.org)

Elephant.mp3 by geronimo83 (freesound.org)

cows_mooing_mono_4824.wav by Mystikuum (freesound.org)

Sheep_Bleat.wav by n_audioman (freesound.org)

06182 male crowd talking – looping.wav by Robinhood76 (freesound.org)

gavel-triplemad.flac by zerolagtim (freesound.org)

Chair.wav by Justeluis (freesound.org)

Cough by FrostyFrost (freesound.org)

BerlinGameScene.com Crowd Mumble 2 by BerlinGameSene (freesound.org)

Low Ambient by Kelewin (freesound.org)

CowsInBarn.wav by Herbert Boland (freesound.org)

Cow moos by josephsardin (freesound.org)

ATM.wav by BeeProductive (freesound.org)

Slide Whistle, Descending, B (H1).wav by InspectorJ (freesound.org)

Short Crunchy Splat by TomchikRec (freesound.org)

Peeeerfect.wav by Digifishmusic (freesound.org)

Haiku - einsame silbe - Leon Gommers.wav by klankbeeld (freesound.org)

rowling different sized ceramic amphoras.wav by Thalamus_Lab (freesound.org)

Orchestral Strings, Warm, A.wav by InspectorJ (freesound.org)

Warm Ambient Drone by Satellites (freesound.org)

Harp by guzusuzu_aqua_Harp (archive.org)

Crackling Fire by samarobryn (freesound.org)

Fire.wav by Adam_N (freesound.org)

Damp Wood Burning by tomaradze (freesound.org)

References

General FMDV virology:

Fields Virology 2013

Adams and Bonami, Atlas of Invertebrate Viruses, 2017

Dillon, Proc Roy Soc B 2011

Jamal & Belsham, 2013 Vet Research

Historical:

Bos 1999 Phil Trans Royal Soc B

1982 Spear DP. Agricultural History "California Besieged: The Foot-and-Mouth Epidemic of 1924 " 56(3) 528-541

News articles from Newspapers.com

African prevalence:

Epidemiol Infect. 1993 Dec;111(3):559-63.

Ayebazibwe et al, 2010 BMC Vet Res

Pathology:

Gailiunus and Cottral, 1966 J Bacteriol 91

Gloster et al 2005 Epidemiol Infect 133 767

Molecular details:

Rodriguez & Saiz 2017 Front Cell & Infection Microbiology

Campbell 1965 J Exp Med

Other:

United States Dept Agriculture Foreign Animal Disease Preparedness & Response Plan – Foot & Mouth Disease Standard Operating Procedures: Overview of Etiology & Ecology. Nov 2016

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Ghosts & genetic testing for infidelity? What IS the point of teaching? Why are students forgetting most of what Jeff teaches? Rob describes what sounds like the best class ever taught.

Email: tracksidescience@gmail.com

Twitter: @TracksideScien1

Instagram: Tracksidescience

Patreon: https://www.patreon.com/tracksidescience

Music:

Night Train, Ernie Englund (1955), Archive.org

Night Train, The Mad Caps (1952), Archive.org

Sounds

Youtube- Wishram, WA to Klamath Falls by ranoutonarail ~2:00 RIP Hobo Stobe

Phoenix, AZ to Nogales, SO - Trainhopping The Arizona Sun Corridor by ranoutonarail

Barstow BNSF freight yard, live recording 3/7/2019 from virtualrailfan live feed

Freesound.org - train screech.wav by incognito_perceptu, Beer bottles clinking inside a box by jmayoff,

Freight train & crossing: Sailor55

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email: tracksidescience@gmail.com

References:

https://viralzone.expasy.org/

Meyer's original paper: https://www.apsnet.org/publications/apsnetfeatures/Documents/2008/Mayer1886.pdf

Beijerinck's translated paper

http://www.apsnet.org/publications/apsnetfeatures/Documents/1998/BeijerckSpotDiseaseTobaccoLeaves.PDF

1921 Federal Reserve Bulletin - https://fraser.stlouisfed.org/title/62/item/20527/toc/392907

Encyclopedia Virginia - https://www.encyclopediavirginia.org/media_player?mets_filename=evm00003159mets.xml

Scholthof - http://www.apsnet.org/publications/apsnetfeatures/Pages/TMV.aspx

Rampersad 2006 Plant Management Network. Relative Distribution and Incidence of Viruses Associated with Disease Outbreaks in Tomato Fields in Trinidad

https://www.plantmanagementnetwork.org/pub/php/research/2006/pymtv/

Alishiri et al 2013 Plant Pathol J. 2013 Sep; 29(3): 260–273.

Trinidad and Tobago – Agriculture. https://www.export.gov/article?id=Trinidad-and-Tobago-Agriculture. Published 6/21/2017. Accessed 8/1/2018 Broadbent, L. 1976 Epidemiology and Control of Tomato Mosaic Virus Ann Rev Phytopathology 14 (75-96)

Pitek et al 2017 Mol Pharm. 2017 Nov 6;14(11):3815-3823.

Frail et al 1997 J Vir. 71(11) 8316

Murray et al 2018 Mol Pharm 2018 May 25

Polischuk et al 2006 FEMS Microbiol Ecol 59 (409-417)

The Rosalind Frankin Papers. https://profiles.nlm.nih.gov/ps/retrieve/Narrative/KR/p-nid/188

Sounds:

Music - “”Freaky Dance Virus 02.wav” by Sepal freesound.org

Beep – “cleanansweringbeep.flac” by kwahmah_02 freesound.org

Bubbles popping - “Bubbles Popping.wav” by AryaNotStark freesound.org

Copier - “Copy Machine 2.aiff” by Brotherprovisonal freesound.org

Slide whistle modified from - “Slide Whistle, Descending, A.wav” by InspectorJ freesound.org

Lab Ambience is a mix of Glass_Bottles_03.wav (dheming), 01648 short bubbles.wav (Robinhood76), magnetic_valves.wav (holger.schwetter), Pouring water (MrAuralization)

Kathotiya, manual wheat harvest 1.mp3 (JordiF)

Locomotive 2 Near horn approaching.wav (patchen)

End music – The Happy Monster by Chubby Jackson and his Orchestra

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As you would expect from a 117 year old recording, the audio quality isn't the best, but here it is - their actual words. See for yourself (link)

tracksidescience@gmail.com

https://www.patreon.com/tracksidescience

Sound credits (all from freesound.org)

polite_applause_01.wav by joedeshon

chair scrape.aif by mredig

gavel-double.flac by zerolagtime

Indoor adult murmur, small group.wav by Splice Sound

Clearing Throat.wav by johnnypanic

Squeaky door opened quickly.wav by CastIronCarousel

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I hate it when you find an amazing new podcast only to find that the most recent episode was put on in 2016.  Oh well, they have a good back-catalog.  https://soundcloud.com/physics-central/star-chaeology-the-next-generation

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Are PhDs going to be of any use after the apocalypse? Is Rob forever trapped as a human geneticist? Should everyone be trained to clean their kitchen using radioactive chicken juice? Jimmy the Student joins the podcast!

tracksidescience@gmail.com

https://www.patreon.com/tracksidescience

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Rob backpacks through Europe for his first conference and Jeff makes a random left hand turn into the best taco shop ever. Conferences - you either love ‘em, hate ‘em or feel somewhere in between about ‘em.

Front bumper: “Lonesome Railroad Blues” 1953 Firehouse Five, plus Two

Sound effect: Freesound.org - Mr. Tea

email: tracksidescience@gmail.com

Patreon: https://www.patreon.com/tracksidescience

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Thracken and Turis are trying to figure out whats up with all the force choking in the Imperial Navy. And wondering about the limits of ethics on the Death Star.

Apollo 11, Space Shuttle launch and Apollo 14 sounds from archive.org

Music - Blue Rain (Lluvai Helancolica) by Terry Snyder Trio; Mercer; Van Hensen

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A science pub bloomed in Sioux Falls and Edisto Beach was discovered.  Cubic wombat poop was solved and Voyager 2 finally escaped.

Twitter: @TracksideScien1

Email: tracksidescience@gmail.com

Patreon: https://www.patreon.com/tracksidescience

Sound effects from Freesound.org:

kangaroovindaloo, BWSmithATL, Ornery, cognito perceptu, Jwill259, nicStage

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Rob’s trying to refute a published finding and Jeff is still hanging on to an authorship shuffle from over 15 years ago. Arsenate can naturally build up to 3mM and some authors are publishing an unfair number of papers.

Felisa Wolfe Simon’s 2010 Science paper (here)

2018 Astrobiology paper that cites the Wolfe paper without qualification (here)

2018 Chemistry (European Journal) paper that cites Wolf paper without qualification (here)

Felisa Wolfe-Simon’s web page (here)

Natural arsenate levels in the deserts of eastern California and Nevada can be ~3mM (here)

Rosemary Redfield’s blog (here)

http://retractionwatch.com/

Sep 12, 2018 Nature Comment - “Thousands of scientists publish a paper every 5 days” (here)

International Committee of Medical Journal Editors policy on authorship (here)

Galadriel Mirkwood, the dog who helped write a paper (here)

Note - Galadriel lived in Lothlorien, which is across the Anduin and separate from Mirkwood

Lack of sleep erodes your blood-brain-barrier (here)

Dr. Arnold J. Berk, still going strong (here)

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Sound credits (freesound.org): InspectorJ, Bram, JakobThiesen

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Rob thinks about serving up celebrities while Jeff contemplates cannibalism. Regulatory, ethical and gustatory roadblocks galore!

Take our 2 question survey: https://goo.gl/forms/fc4T2xP3Nnf44bKx2

Its happening already...Memphis Meats

I Like Cows by Johnny Socko, live in Atlanta 1996

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In a random turn of events, we resurrect the 116 year-old voices from the International Congress of Genetics which was happening at the very same time that we recorded them. Plus, bad accents.

The 1902 Conference Proceedings

The American Florist, Aug 1919

First person to email or tweet at us gets a Science Care Package!

tracksidescience@gmail.com

Twitter: twitter.com/TracksideScien1

Patreon: patreon.com/tracksidescience

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Who knew?  Golly, they sounded so dignified and smart back then huh?

Sound credits (all from freesound.org)

polite_applause_01.wav by joedeshon

chair scrape.aif by mredig

gavel-double.flac by zerolagtime

Heavy Door Pounding.wav by mrh4hn

Floor_trading2.wav by touchassembly

Shhhh_ses2.wav by freesound

door - open 01.wav by Anthousai

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Intrigue at the post Board of Health Meeting discussion: a dangerous virus is a-foot and Dr Salmon wants to kill 'em all.  Rob channels Rich Little and Jeff just tries to keep up.

1903 Journal of the Mass. Board of Health from Google Books here

Great history of the history of the outbreak I found after we recorded (here)

Twitter: TracksideScien1

email us at tracksidescience@gmail.com

https://www.patreon.com/tracksidescience

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The Coming Plague catalyzes both of our decisions to go to graduate school. We pull out our dissertations and compare sizes. Rob describes unstable sequences associated with colon cancers. Jeff describes an adenovirus promoter. We were experts. #glorydays

https://www.patreon.com/tracksidescience

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English & Canadian pop songs are getting more depressing and the Herp is (not) waking up in the Siberian permafrost. Also, Carly Rae Jepson is fettered by her happy songs. And for some reason, we didn't curse the entire time.

Links:

https://www.patreon.com/tracksidescience

Jeff’s BBC article

Rob’s Royal Society of Open Science article and the Jezebel hit piece

Toilet flush from Polytest at Freesound.org

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Viral slushies, catching the Golden State Killer and ancient hepatitis viruses.

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From passive aggressive urination to unintentional oral sampling one's fecal microbiota and moon rocks - this episode's a roller coaster of emotions.  

Like what we're doing?  We'd like to do it better, but we need your support for that.  If you're so moved:

Our Patreon page: https://www.patreon.com/tracksidescience

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What is science communication?  Is it always a good thing?  Our Patreon page: https://www.patreon.com/tracksidescience

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Rob's robots, where we get our information, finishing up with a bit of analysis of pornographic consumption patterns. And beer.

Our Patreon Page

Sites & blogs we mentioned:

Small Things Considered

Neurologica

Sandwalk

John Hawks

History of the Earth

The Junto

Paul Sutter

Science magazine

Science Daily

Livescience

Journals

PLOS Medicine, Genetics & Biology

AJHG

National Association of Science Teachers

Journal of Cell Biology Education

Research for All

Podcasts

This Week in Virology

Medieval Death Trip

PusCast

Imaginary Worlds

Annals of Improbable Research

Pod Stallions

DNA Day

Promedmail

iO9

Wiki Top25 report

Pornhub insights (I’m on my work computer, you can go ahead and Google that yourself)

Soundeffects:

Freight train & crossing: Sailor55, Freesound.org

Music: Night Train, The Mad Caps, Archive.org

Sorry for the weird quality of the sound from my end, there were weird audio surges that I tried to edit out.

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Tolkien move aside, now we have a trilogy too. We talk about our science heros and the influential people in our science lives. And: a short bonus discussion of the potty talk in Ready Player One!

Rob’s Heros

Carl Sagan

Marty Crouch

Marlin Perkins & Jim (Wild Kingdom)

Stephen J Gould

NASA Astronauts

Museums docents

(Museum docents training programs)

Jeff’s Heros

Marie Tharp

Antoine van Leeuwenhoek

Ignaz Semelweis

Henrietta Lacks

(Howard Jones - the doctor who first cultured her cells)

Rosalind Franklin

Rob’s influences

Mr Effinger & Dr Saxman

Dr. Eddie Srour & Dr. Christie Traycoff

Tom Prior & Jim Waldman

Jeff’s influences

Dad & Mr Fernandez

Brad and Sue

Linda & Jerry Boss

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We each share science fields that, while we would look like boobs talking about in a roomful of people, fascinate us. Plus - a commercial!

http://tracksidescience.libsyn.com/

https://www.patreon.com/tracksidescience

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Rob & Jeff talk about the paths they followed into science and to their Bachelor's degrees. Scuba diving in the Florida Keys (he counted them) and commercial fishing in Alaska (I killed them).

Original Cosmos with Carl Sagan on Youtube

Updated Cosmos with Neil Degrasee Tyson at National Geographic

Yes Jeff, Joni Mitchell did sing it before CS said it (here)

The NOAA diving program (here)

National Center for Case Study Teaching in Science