Modern applications are built with modular independent components or microservices that rely on an API framework to communicate with services. Many organizations are building data lakes to store and analyze large volumes of structured, semi-structured, and unstructured data. In addition, many teams are moving towards a data mesh architecture, which requires them to expose their data sets as easily consumable data products. To accomplish this on AWS, organizations use Amazon Simple Storage Service (Amazon S3) to provide cheap and reliable object storage to house their datasets. To enable interactive querying and analyzing their data in place using familiar SQL syntax, many teams are turning to Amazon Athena. Athena is an interactive query service that is used by modern applications to query large volumes of data on an S3 data lake using standard SQL.
When working with SQL databases, application developers and business analysts are most familiar with simple permissions management and synchronous query-response protocols—if a user has permissions to submit a query, they do so and receive the results from the server when the query is complete. Directly accessing Athena APIs, for example when integrating with a custom web application, requires an AWS Identity and Access Management (IAM) role for the applications, and requires you to build a custom process to poll for query completion asynchronously. The IAM role needs access to run Athena API calls, as well as S3 permissions to retrieve the Athena output stored on Amazon S3. Polling for Athena query completion when performed at several intervals could result in increased latency from the client perspective.
In this post, we present a solution that can integrate with your front-end application to query data from Amazon S3 using an Athena synchronous API invocation. With this solution, you can add a layer of abstraction to your application on direct Athena API calls and promote the access using the WebSocket API developed with Amazon API Gateway. The query results are returned back to the application as Amazon S3 presigned URLs.
For illustration purposes, this post builds a COVID-19 data lake with a WebSocket API to handle Athena queries. Your application can invoke the WebSocket API to pull the data from Amazon S3 using an Athena SQL query, and the WebSocket API returns the JSON response with the presigned Amazon S3 URL. The application needs to parse the JSON message to read the presigned URL, download the data to local, and report the data back to the front end.
We use AWS Step Functions to poll the Athena query run. When the query is complete, Step Functions invokes an AWS Lambda function to generate the presigned URL and send the request back to the application.
The application doesn’t require direct access to Athena, just access to invoke the API. When using this solution, you should secure the API following AWS guidelines. For more information, refer to Controlling and managing access to a WebSocket API in API Gateway.
The following diagram summarizes the architecture, key components, and interactions in the solution.

The application is composed of the WebSocket API in API Gateway, which handles the connectivity between the client and Athena. A client application using the framework can submit the Athena SQL query and get back the presigned URL containing the query results data. The workflow includes the following steps:
runquery action, which invokes the RunQuery Lambda function.The RunQuery Lambda function runs the Athena query using the start\_query\_execution request:
The Amazon S3 presigned URL is generated by invoking the generate\_presigned\_url request with the bucket and key information that hosts the Athena results. The code hard codes the presigner expiration to 120 seconds, which is configurable in the function input parameter PreSignerExpireSeconds. See the following code:
This post assumes you have the following:
To enable the WebSocket API of API Gateway, complete the following steps:
To make the data from the AWS COVID-19 data lake available in the Data Catalog in your AWS account, create a CloudFormation stack using the following template. If you’re signed in to your AWS account, the following page fills out most of the stack creation form for you. All you need to do is choose Create stack. For instructions on creating a CloudFormation stack, see Getting started with AWS CloudFormation.
You can also use an existing Athena database to query, in which case you need to update the stack parameters.
If this is the first time you’re using Athena, you must specify a query result location on Amazon S3. For more information about querying and accessing the data from Athena, see A public data lake for analysis of COVID-19 data.
pBucketName with the S3 bucket (in the us-east-2 region) that stores the Athena results and also update the database if you want to query an existing database.At a high level, these are the primary resources deployed by the application template:
To test the WebSocket API, you can use wscat, an open-source command line tool.
WebSocketURI output in the serverlessrepo-aws-app-athena-websocket-integration stack that was deployed by the AWS SAM application you deployed previously.runquery function, send a JSON message like the following example. This triggers the state machine to run your SQL query using Athena and, using Lambda, return an S3 presigned URL to your client, which you can access to download the query results. Note that the API accepts any valid Athena query. Additional query validation could be added to the internal Lambda function if desired.pre-signed-url and enter it into your browser window to access the results.The presigned URL provides you temporary credentials to download the query results. For more information, refer to Using presigned URLs. This process can be integrated into a front-end web application to automatically download and display the results of the query.
To avoid incurring ongoing charges, delete the resources you provisioned by deleting the CloudFormation stacks CovidLakeStacks and serverlessrepo-AthenaWebSocketIntegration via the AWS CloudFormation console. For detailed instructions, refer to the cleanup sections in the starter kit README files in the GitHub repo.
In this post, we showed how to integrate your application with Athena using the WebSocket API. We have included a GitHub repo for you to understand the code and modify it per your application requirements, to get the full benefits of the solution. We encourage you to further explore the features of the API Gateway WebSocket API to add in security using authorizers, view live invocations using dashboards, and expand the framework for more routes on action request.
Let’s stay in touch via the GitHub repo.
Abhi Sodhani is a Sr. AI/ML Solutions Architect at AWS. He helps customers with a wide range of solutions, including machine leaning, artificial intelligence, data lakes, data warehousing, and data visualization. Outside of work, he is passionate about books, yoga, and travel.
Robin Zimmerman is a Data and ML Engineer with AWS Professional Services. He works with AWS enterprise customers to develop systems to extract value from large volumes of data using AWS data, analytics, and machine learning services. When he’s not working, you’ll probably find him in the mountains—rock climbing, skiing, mountain biking, or out on whatever other adventure he can dream up.